polly/test/polybench/datamining/covariance/covariance.c

#include <stdio.h>
#include <unistd.h>
#include <string.h>
#include <math.h>

#include "instrument.h"


/* Default problem size. */
#ifndef M
# define M 500
#endif
#ifndef N
# define N 500
#endif

/* Default data type is double. */
#ifndef DATA_TYPE
# define DATA_TYPE double
#endif
#ifndef DATA_PRINTF_MODIFIER
# define DATA_PRINTF_MODIFIER "%0.2lf "
#endif

/* Array declaration. Enable malloc if POLYBENCH_TEST_MALLOC. */
DATA_TYPE float_n = 321414134.01;
#ifndef POLYBENCH_TEST_MALLOC
DATA_TYPE data[M + 1][N + 1];
DATA_TYPE symmat[M + 1][M + 1];
DATA_TYPE mean[M + 1];
#else
DATA_TYPE** data = (DATA_TYPE**)malloc((M + 1) * sizeof(DATA_TYPE*));
DATA_TYPE** symmat = (DATA_TYPE**)malloc((M + 1) * sizeof(DATA_TYPE*));
DATA_TYPE* mean = (DATA_TYPE*)malloc((M + 1) * sizeof(DATA_TYPE));
{
  int i;
  for (i = 0; i <= M; ++i)
    {
      data[i] = (DATA_TYPE*)malloc((N + 1) * sizeof(DATA_TYPE));
      symmat[i] = (DATA_TYPE*)malloc((M + 1) * sizeof(DATA_TYPE));
    }
}
#endif

inline
void init_array()
{
  int i, j;

  for (i = 0; i <= M; i++)
    for (j = 0; j <= N; j++)
      data[i][j] = ((DATA_TYPE) i*j) / M;
}

/* Define the live-out variables. Code is not executed unless
   POLYBENCH_DUMP_ARRAYS is defined. */
inline
void print_array(int argc, char** argv)
{
  int i, j;
#ifndef POLYBENCH_DUMP_ARRAYS
  if (argc > 42 && ! strcmp(argv[0], ""))
#endif
    {
      for (i = 0; i <= M; i++)
	for (j = 0; j <= M; j++) {
	  fprintf(stderr, DATA_PRINTF_MODIFIER, symmat[i][j]);
	  if ((i * M + j) % 80 == 20) fprintf(stderr, "\n");
	}
      fprintf(stderr, "\n");
    }
}

#ifndef SCOP_PARAM
void scop_func() {
  int m = M;
  int n = N;
#else
void scop_func(long m, long n) {
#endif
  long i, j, j1, j2;
#pragma scop
#pragma live-out symmat

  /* Determine mean of column vectors of input data matrix */
  for (j = 1; j <= m; j++)
  {
    mean[j] = 0.0;
    for (i = 1; i <= n; i++)
      mean[j] += data[i][j];
    mean[j] /= float_n;
  }

  /* Center the column vectors. */
  for (i = 1; i <= n; i++)
    for (j = 1; j <= m; j++)
      data[i][j] -= mean[j];

  /* Calculate the m * m covariance matrix. */
  for (j1 = 1; j1 <= m; j1++)
    for (j2 = j1; j2 <= m; j2++)
    {
      symmat[j1][j2] = 0.0;
      for (i = 1; i <= n; i++)
        symmat[j1][j2] += data[i][j1] * data[i][j2];
      symmat[j2][j1] = symmat[j1][j2];
    }

#pragma endscop
}

int main(int argc, char** argv)
{
  int i, j, j1, j2;
  int m = M;
  int n = N;

  /* Initialize array. */
  init_array();

  /* Start timer. */
  polybench_start_instruments;


#ifndef SCOP_PARAM
  scop_func();
#else
  scop_func(m, n);
#endif

  /* Stop and print timer. */
  polybench_stop_instruments;
  polybench_print_instruments;

  print_array(argc, argv);

  return 0;
}